Repositories list

• netneurolab.github.io

  Public

  netneurolab/netneurolab.github.io’s past year of commit activity
  Network Neuroscience Lab Website

  SCSS

  •1.3k•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• netneurotools

  Public

  netneurolab/netneurotools’s past year of commit activity
  Useful tools from the Network Neuroscience Lab

  pythonneuroimaginghacktoberfest+ 2brain-imagingbrain-networks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •37•109•4•5•Updated Jan 29, 2026Jan 29, 2026

• ceballos_neuropeptide-organization

  Public

  netneurolab/ceballos_neuropeptide-organization’s past year of commit activity
  Repository for the project "Mapping neuropeptide signaling in the human brain"

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•7•0•0•Updated Jan 26, 2026Jan 26, 2026

• neuromaps-mouse

  Public

  netneurolab/neuromaps-mouse’s past year of commit activity
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•0•Updated Jan 22, 2026Jan 22, 2026

• hansen_synaptome

  Public

  netneurolab/hansen_synaptome’s past year of commit activity
  Data and code supporting Hansen et al., 2025, bioRxiv "Synaptome architecture shapes regional dynamics in the mouse brain"

  Python

  •0•4•0•0•Updated Jan 19, 2026Jan 19, 2026

• pourmajidian_metabolism-genes

  Public

  netneurolab/pourmajidian_metabolism-genes’s past year of commit activity
  Python

  •1•2•0•0•Updated Dec 19, 2025Dec 19, 2025

• bazinet_spins

  Public

  netneurolab/bazinet_spins’s past year of commit activity
  Code supporting Bazinet et al., 2025, "The effect of spherical projection on spin tests for brain maps" (Imaging Neuroscience)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Nov 17, 2025Nov 17, 2025

• Farahani_Metabolic_Health

  Public

  netneurolab/Farahani_Metabolic_Health’s past year of commit activity
  Python

  •0•0•0•0•Updated Oct 14, 2025Oct 14, 2025

• pypyls

  Public

  netneurolab/pypyls’s past year of commit activity
  A Python implementation of Partial Least Squares (PLS) decomposition

  Python

  •

  GNU General Public License v2.0

  •37•78•15•3•Updated Sep 18, 2025Sep 18, 2025

• hansen_receptorvar

  Public

  netneurolab/hansen_receptorvar’s past year of commit activity
  Python

  •0•3•0•0•Updated Sep 8, 2025Sep 8, 2025

• Farahani_Blood_Perfusion

  Public

  netneurolab/Farahani_Blood_Perfusion’s past year of commit activity
  Cerebral blood perfusion across biological systems and the human lifespan

  Python

  •0•4•0•0•Updated Aug 28, 2025Aug 28, 2025

• Farahani_ALS

  Public

  netneurolab/Farahani_ALS’s past year of commit activity
  Network spreading and local biological vulnerability in amyotrophic lateral sclerosis

  Python

  •1•4•0•0•Updated Aug 28, 2025Aug 28, 2025

• luppi-cognitive-matching

  Public

  netneurolab/luppi-cognitive-matching’s past year of commit activity
  MATLAB code for Luppi et al (2025) "General anaesthesia reduces the uniqueness of brain functional connectivity across individuals and across species", Nature H…

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Jul 24, 2025Jul 24, 2025

• hansen_many_networks

  Public

  netneurolab/hansen_many_networks’s past year of commit activity
  Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health …

  Python

  •5•35•0•0•Updated Jul 22, 2025Jul 22, 2025

• milisav_hierarchical_modularity

  Public

  netneurolab/milisav_hierarchical_modularity’s past year of commit activity
  Data and code supporting Milisav et al., 2025 "Neuromorphic hierarchical modular reservoirs"

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• neuromaps

  Public

  netneurolab/neuromaps’s past year of commit activity
  A toolbox for comparing brain maps

  pythonneuroimaginghacktoberfest+ 1brain-imaging

  Python

  •

  Other

  •63•317•26•7•Updated Apr 23, 2025Apr 23, 2025

• pypmi

  Public

  netneurolab/pypmi’s past year of commit activity
  A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•0•0•0•Updated Mar 8, 2025Mar 8, 2025

• luppi-neurosynth-control

  Public

  netneurolab/luppi-neurosynth-control’s past year of commit activity
  Code for Luppi et al (2024) Nature Biomedical Engineering

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •3•4•1•0•Updated Feb 2, 2025Feb 2, 2025

• luppi-genes-receptors-macaque

  Public

  netneurolab/luppi-genes-receptors-macaque’s past year of commit activity
  MATLAB code for Luppi et al (2024) "Benchmarking macaque brain gene expression for horizontal and vertical translation"

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• liu_fc-pyspi

  Public

  netneurolab/liu_fc-pyspi’s past year of commit activity
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•13•0•0•Updated Jan 16, 2025Jan 16, 2025

• markello_transcriptome

  Public

  netneurolab/markello_transcriptome’s past year of commit activity
  Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)

  TeX

  •

  BSD 3-Clause "New" or "Revised" License

  •3•10•1•0•Updated Jan 12, 2025Jan 12, 2025

• markello_ppmisnf

  Public

  netneurolab/markello_ppmisnf’s past year of commit activity
  Code supporting the recent preprint Markello et al., 2020

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •8•36•2•3•Updated Jan 12, 2025Jan 12, 2025

• liu_meg-scfc

  Public

  netneurolab/liu_meg-scfc’s past year of commit activity
  Python

  •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025

• shafiei_megdynamics

  Public

  netneurolab/shafiei_megdynamics’s past year of commit activity
  Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•9•0•0•Updated Jan 12, 2025Jan 12, 2025

• shafiei_megfmrimapping

  Public

  netneurolab/shafiei_megfmrimapping’s past year of commit activity
  Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal corte…

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•6•0•0•Updated Jan 12, 2025Jan 12, 2025

• abagen

  Public

  netneurolab/abagen’s past year of commit activity
  A toolbox for working with Allen Human Brain Atlas microarray expression data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •50•14•0•0•Updated Jan 12, 2025Jan 12, 2025

• suarez_neuromorphicnetworks

  Public

  netneurolab/suarez_neuromorphicnetworks’s past year of commit activity
  Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()

  Python

  •

  GNU General Public License v3.0

  •12•53•1•0•Updated Jan 12, 2025Jan 12, 2025

• bazinet_multiscale

  Public

  netneurolab/bazinet_multiscale’s past year of commit activity
  Code and documentation supporting Bazinet et al., 2021, "Multiscale communication in cortico-cortical networks" (NeuroImage)

  Python

  •2•1•0•0•Updated Jan 12, 2025Jan 12, 2025

• marmoset_connectome

  Public

  netneurolab/marmoset_connectome’s past year of commit activity
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Jan 12, 2025Jan 12, 2025

• milisav_strength_nulls

  Public

  netneurolab/milisav_strength_nulls’s past year of commit activity
  Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•6•0•0•Updated Jan 6, 2025Jan 6, 2025