Repositories list

• PathwayBrowser

  Public
  TypeScript

  •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

• statistics-generator

  Public
  Cypher queries to generate automatically release statistics

  R

  •

  MIT License

  •0•1•2•0•Updated Apr 14, 2025Apr 14, 2025

• release-orthoinference

  Public
  Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species

  releasedata-release-pipelinemysql-release

  Java

  •0•0•0•2•Updated Apr 11, 2025Apr 11, 2025

• reactome_galaxy

  Public
  This is for running the analysis service

  Kotlin

  •

  Apache License 2.0

  •0•0•11•0•Updated Apr 11, 2025Apr 11, 2025

• release-download-directory

  Public
  Data-release-pipeline: Generation of files for the Reactome website download directory

  releasedata-release-pipelinemysql-release

  Java

  •1•0•10•1•Updated Apr 9, 2025Apr 9, 2025

• release-update-stable-ids

  Public
  Data-release-pipeline: Updates stable identifiers of manually curated instances

  releasedata-release-pipelinemysql-release

  Java

  •0•0•1•2•Updated Apr 7, 2025Apr 7, 2025

• Website

  Public
  Contains the code and configuration for the website

  PHP

  •

  GNU General Public License v2.0

  •2•5•1•0•Updated Apr 5, 2025Apr 5, 2025

• release-update-dois

  Public
  Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)

  releasedata-release-pipelinemysql-release

  Java

  •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

• search-indexer

  Public
  Java

  •3•0•0•1•Updated Apr 2, 2025Apr 2, 2025

• server-java-utils

  Public
  Server side utilities shared across different projects

  Java

  •

  Apache License 2.0

  •2•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• interaction-exporter

  Public
  Exports molecular interactions inferred from Reactome content

  Java

  •1•5•0•1•Updated Apr 2, 2025Apr 2, 2025

• data-export

  Public
  Creates the files to be placed in the download section

  Java

  •2•2•2•2•Updated Apr 2, 2025Apr 2, 2025

• fireworks-layout

  Public
  Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

  visualisationradial-layoutpathways+ 2pathways-overviewreactome-pathway

  Java

  •3•1•1•0•Updated Apr 2, 2025Apr 2, 2025

• diagram-converter

  Public
  Generates a set of JSON files to be consumed by the Diagram Viewer

  Java

  •3•1•0•0•Updated Apr 2, 2025Apr 2, 2025

• graph-importer

  Public
  Converts the Reactome knowledgebase into a interconnected graph

  Java

  •4•8•0•0•Updated Apr 2, 2025Apr 2, 2025

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• interactors-core

  Public
  Java

  •2•0•0•1•Updated Apr 2, 2025Apr 2, 2025

• search-core

  Public
  Java

  •2•1•0•0•Updated Apr 2, 2025Apr 2, 2025

• graph-qa

  Public
  Used to report possible data inconsistencies

  Java

  •1•1•0•0•Updated Apr 2, 2025Apr 2, 2025

• event-pdf

  Public
  Generates the Reactome book

  Java

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Apr 1, 2025Apr 1, 2025

• fireworks-exporter

  Public
  Exports the pathways overview as raster images

  Java

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• reactome-parent

  Public
  Shell

  •1•0•0•2•Updated Apr 1, 2025Apr 1, 2025

• analysis-report

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •2•1•0•0•Updated Apr 1, 2025Apr 1, 2025

• reaction-exporter

  Public
  Java

  •2•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• diagram-exporter

  Public
  Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)

  Java

  •3•1•2•2•Updated Apr 1, 2025Apr 1, 2025

• diagram-reader

  Public
  Java

  •1•0•0•1•Updated Apr 1, 2025Apr 1, 2025

• analysis-core

  Public
  Pathway enrichment and expression analysis as well as species comparison tool

  Java

  •6•3•1•0•Updated Apr 1, 2025Apr 1, 2025

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •7•18•2•2•Updated Apr 1, 2025Apr 1, 2025

• gsa-backend

  Public
  Backend code of the Kubernetes based ReactomeGSA Analysis System

  Python

  •1•4•17•2•Updated Mar 27, 2025Mar 27, 2025

• reactome_chatbot

  Public
  This is Reactomes chatbot to its database and search index

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 26, 2025Mar 26, 2025