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Reactome

A curated pathway database

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  1. reactome2py reactome2py Public

    python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

    Python 29 9

  2. ReactomeGSA ReactomeGSA Public

    R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

    R 22 5

  3. graph-core graph-core Public

    Models the Reactome knowledgebase into a interconnected graph

    Java 18 7

  4. pwp-browser pwp-browser Public

    A tool for visualising and interacting with pathways data

    Java 10 7

  5. container container Public

    🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧

    Perl 9 4

  6. content-service content-service Public

    The new Reactome REST API to access the data

    Java 9 5

Repositories

Showing 10 of 129 repositories
  • release-orthoinference Public

    Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species

    reactome/release-orthoinference’s past year of commit activity
    Java 0 0 0 2 Updated Apr 11, 2025
  • reactome/PathwayBrowser’s past year of commit activity
    TypeScript 0 0 0 0 Updated Apr 11, 2025
  • reactome_galaxy Public

    This is for running the analysis service

    reactome/reactome_galaxy’s past year of commit activity
    Kotlin 0 Apache-2.0 0 11 0 Updated Apr 11, 2025
  • release-download-directory Public

    Data-release-pipeline: Generation of files for the Reactome website download directory

    reactome/release-download-directory’s past year of commit activity
    Java 0 1 10 1 Updated Apr 9, 2025
  • release-update-stable-ids Public

    Data-release-pipeline: Updates stable identifiers of manually curated instances

    reactome/release-update-stable-ids’s past year of commit activity
    Java 0 0 1 2 Updated Apr 7, 2025
  • Website Public

    Contains the code and configuration for the website

    reactome/Website’s past year of commit activity
    PHP 5 GPL-2.0 2 1 0 Updated Apr 5, 2025
  • release-update-dois Public

    Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)

    reactome/release-update-dois’s past year of commit activity
    Java 1 0 0 0 Updated Apr 3, 2025
  • reactome/search-indexer’s past year of commit activity
    Java 0 3 0 1 Updated Apr 2, 2025
  • server-java-utils Public

    Server side utilities shared across different projects

    reactome/server-java-utils’s past year of commit activity
    Java 0 Apache-2.0 2 0 0 Updated Apr 2, 2025
  • interaction-exporter Public

    Exports molecular interactions inferred from Reactome content

    reactome/interaction-exporter’s past year of commit activity
    Java 5 1 0 1 Updated Apr 2, 2025

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