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Fix linting from a comment

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Update subworkflow pairs_create_contact_maps
Fix linting from a comment #36: Issue comment #146 (comment) created by DLBPointon
1s
Update to include ULTRA res pretextmaps
Fix linting from a comment #35: Issue comment #143 (comment) created by DLBPointon
1s
Make the test profile independent from GitHub/Sanger
Fix linting from a comment #34: Issue comment #22 (comment) created by DLBPointon
11s
Ensure the pipeline runs on AWS accessible data
Fix linting from a comment #33: Issue comment #63 (comment) created by DLBPointon
1s
Ensure s3 paths work
Fix linting from a comment #32: Issue comment #31 (comment) created by DLBPointon
1s
Dev2Main
Fix linting from a comment #31: Issue comment #142 (comment) created by DLBPointon
2s
Dev2Main - [1.6.0] - UNSC Trafalgar
Fix linting from a comment #30: Issue comment #137 (comment) created by muffato
1s
Subworkflow update
Fix linting from a comment #29: Issue comment #132 (comment) created by DLBPointon
1s
Use Samplesheets rather than file search
Fix linting from a comment #28: Issue comment #119 (comment) created by DLBPointon
1s
No HiRes
Fix linting from a comment #27: Issue comment #96 (comment) created by DLBPointon
1s
Update GENERATE_CRAM_CSV to samtools 1.20
Fix linting from a comment #26: Issue comment #62 (comment) created by DLBPointon
2s
Subworkflow update
Fix linting from a comment #25: Issue comment #132 (comment) created by DLBPointon
1s
Subworkflow update
Fix linting from a comment #24: Issue comment #132 (comment) created by prototaxites
1s
Subworkflow update
Fix linting from a comment #23: Issue comment #132 (comment) created by prototaxites
2s
Subworkflow update
Fix linting from a comment #22: Issue comment #132 (comment) created by DLBPointon
2s
Subworkflow update
Fix linting from a comment #21: Issue comment #132 (comment) created by prototaxites
1s
Update for v25.11.0-edge
Fix linting from a comment #20: Issue comment #127 (comment) created by sanger-tolsoft
1s
Update for v25.11.0-edge
Fix linting from a comment #19: Issue comment #127 (comment) created by bentsherman
1s
New template 3.5
Fix linting from a comment #18: Issue comment #126 (comment) created by muffato
2s
Update contributor name and affiliation
Fix linting from a comment #17: Issue comment #125 (comment) created by mahesh-panchal
1s
Update contributor name and affiliation
Fix linting from a comment #16: Issue comment #125 (comment) created by sanger-tolsoft
2s
Failed to pull singularity image
Fix linting from a comment #12: Issue comment #43 (comment) created by DLBPointon
1s