Identify and quantify MHC eluted peptides from mass spectrometry raw data

Fork of the Polysolver project

Tiny-R2: A hybrid architecture integrating SWA, CSA, HCA, mHC, and DSMoE under the DeepSeek V4 design paradigm, enabling single-GPU OPD post-training.

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

Interactive visualization of Manifold-Constrained Hyper-Connections (mHC) for stable deep network training

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

Standardise TR/MH/IG data

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

Metahash API client

Mining TCR:pMHC structural data

Dataset of 86.000 peptides and their binding degree, that can be used to predict, whether a peptide is binded or not.

A tool for downloading HLA alleles, epitopes and frequencies

Comparing ResNet vs Hyper-Connections vs causal Sinkhorn mHC on Fashion-MNIST using MLX.

A utility for splitting mixed origin NGS reads with secondary or alt mappings

GPU-based implementation for the HLA genotype imputation method (HIBAG)

MLX + Metal implementation of mHC: Manifold-Constrained Hyper-Connections by DeepSeek-AI.

Motor-control project for CPAP/BiPAP respiratory equipment reference solutions.

Immunopeptidogenomics — cryptic peptide database construction from RNA-seq. An nf-core-style port of the 31-step IPG pipeline (Scull et al. Mol Cell Proteomics 2021), built for the Li and Purcell Labs at Monash University.