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Jul 1, 2026 - Python
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neoantigens
Here are 9 public repositories matching this topic...
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
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Jun 6, 2025 - Nextflow
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
bioinformatics immunogenomics immunogenicity-prediction cancer-immunology netmhciipan netmhcpan neoantigen-annotation neoantigens
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Jan 27, 2026 - Python
Snakemake-based computational workflow for neoantigen prediction from diverse sources
snakemake gene-fusion indels immunotherapy vaccine peptide snakemake-workflow splicing epitope neoantigens exitron neoepitope
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Jun 21, 2026 - Python
A bayesian hierarchical model for neoantgien-T cell interaction estimation
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Jan 20, 2022 - R
Long-read toolkit for mutant proteoform prediction - somatic/germline DNA and RNA variant calling, integration, and translation
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May 27, 2026 - Rust
Immunopeptidogenomics pipeline that builds a cryptic peptide database from RNA-seq and identifies non-canonical (cryptic) peptides in immunopeptidomics mass spectrometry data.
bioinformatics nextflow reproducible-research monash-university rnaseq pixi mhc mass-spectrometry hla cancer-research mutect2 stringtie nf-core cancer-immunotherapy gatk4 neoantigens star-aligner immunopeptidomics immunopeptidogenomics cryptic-peptides
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Jul 1, 2026 - Nextflow
ABPEPserver is an online database and analytical platform that offers the visualization of a large-scale tumour proteomics analysis of Substitutant expression across multiple tumour types.
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Dec 15, 2022 - R
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