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Updated disk size calculation for genomicsDB import. CI #5995: Commit 8ec4c7d pushed by jonn-smith
10m 52s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 52s
Removed runtime attribute override. CI #5994: Commit 7e45b4c pushed by jonn-smith
10m 30s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 30s
More disk space fixes. CI #5993: Commit a640718 pushed by jonn-smith
10m 44s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 44s
Updated disk size. CI #5992: Commit 51f4050 pushed by jonn-smith
10m 21s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 21s
GREGoR customization: VBID2, standarize lrBAM @SQ headers CI #5991: Commit 7294fe5 pushed by SHuang-Broad
21s sh_gregor_vbid2
sh_gregor_vbid2
21s
Added more memory / disk space logging for ImportGVCFs CI #5990: Commit b249458 pushed by jonn-smith
10m 26s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 26s
GREGoR customization: VBID2, standarize lrBAM @SQ headers CI #5989: Commit e7a5bc1 pushed by SHuang-Broad
17s sh_gregor_vbid2
sh_gregor_vbid2
17s
one odd ball, take me away CI #5988: Commit 863782f pushed by SHuang-Broad
20s sh_ont_fc_greg
sh_ont_fc_greg
20s
Fixed bam index name issue in MarkDuplicatesAndSort CI #5987: Commit e77f72d pushed by jonn-smith
10m 27s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 27s
Debuggin. CI #5986: Commit c6f8608 pushed by jonn-smith
9m 54s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
9m 54s
Fixing another issue in sort in MarkDuplicatesAndSort CI #5985: Commit 36950d6 pushed by jonn-smith
11m 8s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
11m 8s
Fixing bug in the sort portion of MarkDuplicatesAndSort CI #5984: Commit 9ee608f pushed by jonn-smith
10m 23s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 23s
Added SRJointCallGVCFsWithGenomicsDB_simplified.wdl CI #5983: Commit 13b6dbf pushed by jonn-smith
10m 20s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 20s
Added simplified wdls. CI #5982: Commit 9f79f90 pushed by jonn-smith
11m 6s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
11m 6s
Updated preemptible tries in haplotypecaller to 2. CI #5981: Commit 3487b86 pushed by jonn-smith
10m 16s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 16s
Fixed more heredoc / script nonsense in on-prem tasks. CI #5980: Commit 54348e1 pushed by jonn-smith
40m 58s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
40m 58s
Fixed issue with heredoc code. CI #5979: Commit a912c92 pushed by jonn-smith
10m 3s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
10m 3s
Fixing issue with on-prem variant calling gvcf outputs. CI #5978: Commit dcf8b75 pushed by jonn-smith
10m 18s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
10m 18s
Fixing typo in Niare VQSR Joint Calling workflow. CI #5977: Commit 82aa072 pushed by jonn-smith
10m 6s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
10m 6s
Fixed typo in pipe placement. CI #5976: Commit 56a682e pushed by jonn-smith
10m 4s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
10m 4s
Fixed issue with output sorting in Utils::SplitContigToIntervals CI #5975: Commit 9c5af41 pushed by jonn-smith
9m 45s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
9m 45s
Removing teh sort that I added because it's not needed. CI #5974: Commit 8f9efd9 pushed by jonn-smith
9m 47s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
9m 47s
Added a flag to GatherVCFs to sort the input VCFs before running. CI #5973: Commit 9efa7ec pushed by jonn-smith
10m 1s jts_fix_comparison_malaria_pipelines
jts_fix_comparison_malaria_pipelines
10m 1s
Removed unused task from HaplotypeCaller_Simplified.wdl CI #5972: Commit dc43b2b pushed by jonn-smith
9m 41s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
9m 41s
Added simplified version of SRWholeGenome. CI #5971: Commit 1108d7e pushed by jonn-smith
10m 40s jts_malaria_pipeline_optimization
jts_malaria_pipeline_optimization
10m 40s