Genomics and Phylodynamics of SARS CoV 2

COVID-19

A public repository of scientific and media resources of SARS-CoV-2 related COVID-19 maintained by ITER.

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Genomics and Phylodynamics of SARS-CoV-2

Section devoted to show main findings in the virus genome.

A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing Data

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020)

A New Resource for Genomics and Precision Health Information and Publications on the Investigation and Control of COVID-19 and other Coronaviruses

Characterization of intra-host SARS-CoV-2 variants improves phylogenomics reconstruction and may reveal functionally convergent mutations

Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site

Comparative ACE2 variation and primate COVID-19 risk

Comparative transcriptome analysis reveals the intensive early-stage responses of host cells to SARS-CoV-2 infection

Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal

CoV-GLUE. Virus genome analysis for the SARS-CoV-2 pandemic

COVID-19 Cell Atlas

CovProfile: profiling the viral genome and gene expressions of SARS-COV2

Direct RNA sequencing and early evolution of SARS-CoV-2

Elevated Plasmin(ogen) as a Common Risk Factor for COVID-19 Susceptibility

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

Emergence of multiple variants of SARS-CoV-2 with signature structural changes

Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

Failed detection of the full-length genome of SARS-CoV-2 by ultra-deep sequencing from the recovered and discharged patients retested viral PCR positive

Genomewide Association Study of Severe Covid-19 with Respiratory Failure

Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses

Genomic diversity of SARS-CoV-2 in Coronavirus Disease 2019 patients

Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue

Genomic variations of SARS-CoV-2 suggest multiple outbreak sources of transmission

Global patterns in coronavirus diversity

How fast does the SARS-Cov-2 virus really mutate in heterogeneous populations?

In-depth Bioinformatic Analyses of Human SARS-CoV-2, SARS-CoV, MERS-CoV, and Other Nidovirales Suggest Important Roles of Noncanonical Nucleic Acid Structures in Their Lifecycles

Issues with SARS-CoV-2 sequencing data

Knowledge synthesis from 100 million biomedical documents augments the deep expression profiling of coronavirus receptors

LAMP-Seq: Population-Scale COVID-19 Diagnostics Using a Compressed Barcode Space

Massive Multiplexing Can Deliver a $1 Test for COVID-19

MERS-CoV recombination: implications about the reservoir and potential for adaptation

Nanopore target sequencing for accurate and comprehensive detection of SARS-CoV-2 and other respiratory viruses

Phylodynamics of SARS-CoV-2 transmission in Spain

Presence of Genetic Variants Among Young Men With Severe COVID-19

Proyecto Epidemiologia Genomica COVID 19

Proyecto SeqCOVID – Genomic epidemiology of SARS-CoV-2 in Spain

Rapid implementation of real-time SARS-CoV-2 sequencing to investigate healthcare-associated COVID-19 infections

Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform

Revealing variants in SARS-CoV-2 interaction domain of ACE2 and loss of function intolerance through analysis of >200,000 exomes

Quality control of low-frequency variants in SARS-CoV-2 genomes

Reproducible analyses for rejecting rare genomic inversions in SARS-CoV-2

REVEALING COVID-19 TRANSMISSION BY SARS-CoV-2 GENOME SEQUENCING AND AGENT BASED MODELLING

RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak

SARS coronavirus 2 in Viral Zone / Covid-19 genome expression

SARS-CoV-2 exhibits intra-host genomic plasticity and low-frequency polymorphic quasispecies

SARS-CoV-2 Receptor ACE2 is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Enriched in Specific Cell Subsets Across Tissues

Sequence Characterization and Molecular Modeling of Clinically Relevant Variants of the SARS-CoV-2 Main Protease

Specific mutations in SARS-CoV2 RNA dependent RNA polymerase and helicase alter protein structure, dynamics and thus function: Effect on viral RNA replication

Synonymous mutations and the molecular evolution of SARS-Cov-2 origins

The architecture of SARS-CoV-2 transcriptome

The genomic variation landscape of globally-circulating clades of SARS-CoV-2 defines a genetic barcoding scheme

The proximal origin of SARS-CoV-2

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) envelope (E) protein harbors a conserved BH3-like motif

ViralZone. SARS coronavirus 2 / Covid-19 genome expression