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Pooling and Group Testing

Genomics Division, ITER edited this page Aug 12, 2020 · 1 revision

COVID-19

A public repository of scientific and media resources of SARS-CoV-2 related COVID-19 maintained by ITER.

Pooling and Group Testing

Subsection dedicated to pooling of samples to apply PCR (RT-qPCR) to groups of individuals.


A Note on Double Pooling Tests

Assessment of sample pooling for clinical SARS-CoV-2 testing

Evaluation of commercial qPCR kits for detection of SARS-CoV-2 in pooled samples

Evaluation of COVID-19 RT-qPCR Test in Multi sample Pools

Early detection of superspreaders by mass group pool testing can mitigate COVID-19 pandemic

Efficient and Practical Sample Pooling for High-Throughput PCR Diagnosis of COVID-19

Efficient prevalence estimation and infected sample identification with group testing for SARS-CoV-2

Efficient sample pooling strategies for COVID-19 data gathering

Evaluation of COVID-19 RT-qPCR Test in Multi sample Pools

Evaluation of Group Testing for SARS-CoV-2 RNA

Evaluation of Pool-based Testing Approaches to Enable Population-wide Screening for COVID-19

Evaluation of Sample Pooling for Screening of SARS-CoV-2

False-Negative Mitigation in Group Testing for COVID-19 Screening

Increasing testing throughput and case detection with a pooled-sample Bayesian approach in the context of COVID-19

Group testing against Covid-19

Group Testing for Estimation

Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies

Group testing performance evaluation for SARS-CoV-2 massive scale screening and testing

Increased PCR screening capacity using a multi-replicate pooling scheme

Increasing testing throughput and case detection with a pooled-sample Bayesian approach in the context of COVID-19

Increasing Virus Test Capacity via Recursive Pool Testing with an Application to SARS-CoV-2 Testing

LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

Large-scale implementation of pooled RNA-extraction and RT-PCR for SARS-CoV-2 detection

Methodology for estimating point prevalence of SARS-CoV-2 infection by pooled RT-PCR testing

Multi-Stage Group Testing Improves Efficiency of Large-Scale COVID-19 Screening

Nanotrap® particles improve detection of SARS-CoV-2 for pooled sample methods, extraction-free saliva methods, and extraction-free transport medium methods

Noisy Pooled PCR for Virus Testing

Optimal Pool Size for COVID-19 Group Testing

Optimally Pooled Viral Testing

Optimal group based testing strategy for detecting infected individuals: comparison of algorithms

Optimal sample pooling: an efficient tool against SARS-CoV-2

Optimal Size of COVID-19 Testing Pools

Optimal size of sample pooling for RNA pool testing: an avant-garde for scaling up SARS CoV 2 testing

Pooled testing with replication: a mass testing strategy for the COVID-19 pandemics

Pooling nasopharyngeal swab specimens to increase testing capacity for SARS-CoV-2

Pooling of Samples to Increase Testing Capacity for COVID-19

Rapid, Large-Scale, and Effective Detection of COVID-19 Via Non-Adaptive Testing

Recommendations for sample pooling on the Cepheid GeneXpert® system using the Cepheid Xpert® Xpress SARS-CoV-2 assay

Remarks on pooling Coronavirus tests

Sample Pooling as an efficient strategy for SARS-COV-2 RT-PCR screening: a multicenter study in Spain

Sample pooling on triplets to speed up SARS-CoV-2 diagnosis using CDC FDA EUA RT-qPCR kit

SCALE19: A scalable and cost-efficient method for testing Covid-19 based on hierarchical group testing

Sequential informed pooling approach to detect SARS-CoV2 infection

Smart Pooling: AI-powered COVID-19 testing

Statistical methods for batch screening of input populations by stage and group in COVID-19 nucleic acid testing

Tapestry: A Single-Round Smart Pooling Technique for COVID-19 Testing

The brief comparison of the operational efficiency of pool-testing strategies for COVID-19 mass testing in PCR laboratories

The Mathematics of Mass Testing for COVID-19

Throat wash as a source of SARS-CoV-2 RNA to monitor community spread of COVID-19